HL_8QYX_004
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CCGCGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8QYX|1|A2|G|135, 8QYX|1|A2|C|136
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_004 not in the Motif Atlas
- Homologous match to HL_8C3A_004
- Geometric discrepancy: 0.5014
- The information below is about HL_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86929.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8QYX|1|A2|C|130
8QYX|1|A2|C|131
8QYX|1|A2|G|132
8QYX|1|A2|C|133
8QYX|1|A2|G|134
8QYX|1|A2|G|135
8QYX|1|A2|C|136
8QYX|1|A2|G|137
8QYX|1|A2|G|138
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain H1
- 60S ribosomal protein L15
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
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