HL_8QYX_005

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8QYX|1|A2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_005 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.367

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8QYX|1|A2|U|204
8QYX|1|A2|C|205
8QYX|1|A2|U|206
8QYX|1|A2|G|207
8QYX|1|A2|A|208
8QYX|1|A2|U|209
8QYX|1|A2|C|210
8QYX|1|A2|G|211

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S1

60S ribosomal protein L26

Chain Y1

60S ribosomal protein L32