HL_8QYX_007

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_007 not in the Motif Atlas

Homologous match to HL_8P9A_119

Geometric discrepancy: 0.4942

The information below is about HL_8P9A_119

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

8QYX|1|A2|G|230
8QYX|1|A2|U|231
8QYX|1|A2|G|232
8QYX|1|A2|U|233
8QYX|1|A2|G|234
8QYX|1|A2|A|235
8QYX|1|A2|G|236
8QYX|1|A2|G|237
8QYX|1|A2|C|238

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

60S ribosomal protein L4

Chain S1

60S ribosomal protein L26