3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CGUAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_010 not in the Motif Atlas
Homologous match to HL_8P9A_122
Geometric discrepancy: 0.0733
The information below is about HL_8P9A_122
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8QYX|1|A2|C|368
8QYX|1|A2|G|369
8QYX|1|A2|U|370
8QYX|1|A2|A|371
8QYX|1|A2|A|372
8QYX|1|A2|G|373

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F2
60S ribosomal protein L4
Chain d1
60S ribosomal protein L37
Chain f1
60S ribosomal protein L39

Coloring options:


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