HL_8QYX_014

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

8QYX|1|A2|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0736

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8QYX|1|A2|U|1317
8QYX|1|A2|C|1318
8QYX|1|A2|U|1319
8QYX|1|A2|U|1320
8QYX|1|A2|G|1321
8QYX|1|A2|1MA|1322
8QYX|1|A2|A2M|1323
8QYX|1|A2|A|1324
8QYX|1|A2|C|1325
8QYX|1|A2|A2M|1326

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain U1

Large ribosomal subunit protein uL15

Chain V1

60S ribosomal protein L29

Chain Y1

60S ribosomal protein L32