HL_8QYX_021

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8QYX|1|A2|U|1596, 8QYX|1|A2|A|1600, 8QYX|1|A2|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_021 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0755

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

8QYX|1|A2|A|1593
8QYX|1|A2|C|1594
8QYX|1|A2|G|1595
8QYX|1|A2|U|1596
8QYX|1|A2|G|1597
8QYX|1|A2|C|1598
8QYX|1|A2|A|1599
8QYX|1|A2|A|1600
8QYX|1|A2|A|1601
8QYX|1|A2|U|1602

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain J1

60S ribosomal protein L17

Chain d1

60S ribosomal protein L37