HL_8QYX_022

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|A|1630, 8QYX|1|A2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_022 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0722

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8QYX|1|A2|G|1627
8QYX|1|A2|C|1628
8QYX|1|A2|G|1629
8QYX|1|A2|A|1630
8QYX|1|A2|A|1631
8QYX|1|A2|A|1632
8QYX|1|A2|G|1633
8QYX|1|A2|A|1634
8QYX|1|A2|C|1635

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain H1

60S ribosomal protein L15

Chain d1

60S ribosomal protein L37