HL_8QYX_025

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8QYX|1|A2|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_025 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.3657

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8QYX|1|A2|C|1816
8QYX|1|A2|U|1817
8QYX|1|A2|G|1818
8QYX|1|A2|G|1819
8QYX|1|A2|C|1820
8QYX|1|A2|G|1821
8QYX|1|A2|U|1822
8QYX|1|A2|G|1823

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain N1

60S ribosomal protein L21

Chain V1

60S ribosomal protein L29