HL_8QYX_032

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8QYX|1|A2|G|2421, 8QYX|1|A2|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_032 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1893

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8QYX|1|A2|A|2420
8QYX|1|A2|G|2421
8QYX|1|A2|OMC|2422
8QYX|1|A2|A|2423
8QYX|1|A2|OMG|2424
8QYX|1|A2|U|2425
8QYX|1|A2|U|2426

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J1

60S ribosomal protein L17

Chain L1

60S ribosomal protein L19

Chain f1

60S ribosomal protein L39