HL_8QYX_039
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GUUCUCUU(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 8QYX|1|A2|U|2631
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_039 not in the Motif Atlas
- Homologous match to HL_8P9A_148
- Geometric discrepancy: 0.1623
- The information below is about HL_8P9A_148
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_22758.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8QYX|1|A2|G|2624
8QYX|1|A2|U|2625
8QYX|1|A2|U|2626
8QYX|1|A2|C|2627
8QYX|1|A2|U|2628
8QYX|1|A2|C|2629
8QYX|1|A2|U|2630
8QYX|1|A2|U|2631
8QYX|1|A2|PSU|2632
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain L1
- 60S ribosomal protein L19
- Chain O1
- 60S ribosomal protein L22
Coloring options: