3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
GUUCUCUU(PSU)
Length
9 nucleotides
Bulged bases
8QYX|1|A2|U|2631
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_039 not in the Motif Atlas
Homologous match to HL_8P9A_148
Geometric discrepancy: 0.1623
The information below is about HL_8P9A_148
Detailed Annotation
Pseudoknot geometry
Broad Annotation
Pseudoknot geometry
Motif group
HL_68642.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

8QYX|1|A2|G|2624
8QYX|1|A2|U|2625
8QYX|1|A2|U|2626
8QYX|1|A2|C|2627
8QYX|1|A2|U|2628
8QYX|1|A2|C|2629
8QYX|1|A2|U|2630
8QYX|1|A2|U|2631
8QYX|1|A2|PSU|2632

Current chains

Chain A2
28S rRNA

Nearby chains

Chain L1
60S ribosomal protein L19
Chain O1
60S ribosomal protein L22

Coloring options:


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