HL_8QYX_040

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_040 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3001

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8QYX|1|A2|G|2664
8QYX|1|A2|U|2665
8QYX|1|A2|U|2666
8QYX|1|A2|C|2667
8QYX|1|A2|G|2668
8QYX|1|A2|C|2669
8QYX|1|A2|C|2670

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L19

Chain j1

60S ribosomal protein L37a