HL_8QYX_045

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

8QYX|1|A2|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_045 not in the Motif Atlas

Homologous match to HL_8P9A_154

Geometric discrepancy: 0.067

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8QYX|1|A2|C|2872
8QYX|1|A2|U|2873
8QYX|1|A2|U|2874
8QYX|1|A2|C|2875
8QYX|1|A2|OMG|2876
8QYX|1|A2|G|2877

Current chains

Chain A2

28S rRNA

Nearby chains

Chain j1

60S ribosomal protein L37a