3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
(PSU)UUAAUUAAAA
Length
11 nucleotides
Bulged bases
8QYX|1|A2|A|3642, 8QYX|1|A2|A|3643, 8QYX|1|A2|U|3644, 8QYX|1|A2|A|3648
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_047 not in the Motif Atlas
Homologous match to HL_8P9A_157
Geometric discrepancy: 0.1182
The information below is about HL_8P9A_157
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_87681.1
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8QYX|1|A2|PSU|3639
8QYX|1|A2|U|3640
8QYX|1|A2|U|3641
8QYX|1|A2|A|3642
8QYX|1|A2|A|3643
8QYX|1|A2|U|3644
8QYX|1|A2|U|3645
8QYX|1|A2|A|3646
8QYX|1|A2|A|3647
8QYX|1|A2|A|3648
8QYX|1|A2|A|3649

Current chains

Chain A2
28S rRNA

Nearby chains

Chain D2
Large ribosomal subunit protein uL2
Chain d1
60S ribosomal protein L37

Coloring options:


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