HL_8QYX_053

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGCGCGCCG

Length

9 nucleotides

Bulged bases

8QYX|1|A2|C|4140, 8QYX|1|A2|G|4141, 8QYX|1|A2|C|4142, 8QYX|1|A2|G|4143, 8QYX|1|A2|C|4144, 8QYX|1|A2|C|4145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_053 not in the Motif Atlas

Homologous match to HL_8C3A_054

Geometric discrepancy: 0.1901

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8QYX|1|A2|C|4138
8QYX|1|A2|G|4139
8QYX|1|A2|C|4140
8QYX|1|A2|G|4141
8QYX|1|A2|C|4142
8QYX|1|A2|G|4143
8QYX|1|A2|C|4144
8QYX|1|A2|C|4145
8QYX|1|A2|G|4146

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a