3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
UCAAACGGUA(6MZ)CG
Length
13 nucleotides
Bulged bases
8QYX|1|A2|A|4214, 8QYX|1|A2|C|4221
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QYX_055 not in the Motif Atlas
Homologous match to HL_8P9A_166
Geometric discrepancy: 0.1088
The information below is about HL_8P9A_166
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_02042.1
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
12

Unit IDs

8QYX|1|A2|U|4210
8QYX|1|A2|C|4211
8QYX|1|A2|A|4212
8QYX|1|A2|A|4213
8QYX|1|A2|A|4214
8QYX|1|A2|C|4215
8QYX|1|A2|G|4216
8QYX|1|A2|G|4217
8QYX|1|A2|U|4218
8QYX|1|A2|A|4219
8QYX|1|A2|6MZ|4220
8QYX|1|A2|C|4221
8QYX|1|A2|G|4222

Current chains

Chain A2
28S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain D1
Ribosomal protein uL16-like
Chain N1
60S ribosomal protein L21
Chain V1
60S ribosomal protein L29

Coloring options:


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