HL_8QYX_055
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 8QYX|1|A2|A|4214, 8QYX|1|A2|C|4221
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_055 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1088
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8QYX|1|A2|U|4210
8QYX|1|A2|C|4211
8QYX|1|A2|A|4212
8QYX|1|A2|A|4213
8QYX|1|A2|A|4214
8QYX|1|A2|C|4215
8QYX|1|A2|G|4216
8QYX|1|A2|G|4217
8QYX|1|A2|U|4218
8QYX|1|A2|A|4219
8QYX|1|A2|6MZ|4220
8QYX|1|A2|C|4221
8QYX|1|A2|G|4222
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain D1
- Ribosomal protein uL16-like
- Chain N1
- 60S ribosomal protein L21
- Chain V1
- 60S ribosomal protein L29
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