HL_8QYX_061

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8QYX|1|A2|U|4419

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_061 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1256

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8QYX|1|A2|C|4417
8QYX|1|A2|G|4418
8QYX|1|A2|U|4419
8QYX|1|A2|PSU|4420
8QYX|1|A2|C|4421
8QYX|1|A2|A|4422
8QYX|1|A2|PSU|4423
8QYX|1|A2|A|4424
8QYX|1|A2|G|4425

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

Ribosomal protein uL16-like

Chain g1

Large ribosomal subunit protein eL40