HL_8QYX_070

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

8QYX|1|A2|U|5022, 8QYX|1|A2|C|5023, 8QYX|1|A2|C|5024, 8QYX|1|A2|C|5025, 8QYX|1|A2|U|5026, 8QYX|1|A2|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QYX_070 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2696

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8QYX|1|A2|C|5021
8QYX|1|A2|U|5022
8QYX|1|A2|C|5023
8QYX|1|A2|C|5024
8QYX|1|A2|C|5025
8QYX|1|A2|U|5026
8QYX|1|A2|C|5027
8QYX|1|A2|G|5028

Current chains

Chain A2

28S rRNA

Nearby chains