HL_8QYX_074
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_074 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.1754
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8QYX|1|C2|C|47
8QYX|1|C2|A|48
8QYX|1|C2|G|49
8QYX|1|C2|C|50
8QYX|1|C2|U|51
8QYX|1|C2|A|52
8QYX|1|C2|G|53
8QYX|1|C2|C|54
8QYX|1|C2|PSU|55
8QYX|1|C2|G|56
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain R1
- 60S ribosomal protein L23a
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
- Chain f1
- 60S ribosomal protein L39
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