HL_8QYX_075
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8QYX|1|C2|A|82, 8QYX|1|C2|A|84, 8QYX|1|C2|U|85, 8QYX|1|C2|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QYX_075 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5799
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8QYX|1|C2|G|68
8QYX|1|C2|PSU|69
8QYX|1|C2|G|70
8QYX|1|C2|A|71
8QYX|1|C2|A|72
8QYX|1|C2|U|73
8QYX|1|C2|U|74
8QYX|1|C2|OMG|75
8QYX|1|C2|C|76
8QYX|1|C2|A|77
8QYX|1|C2|G|78
8QYX|1|C2|G|79
8QYX|1|C2|A|80
8QYX|1|C2|C|81
8QYX|1|C2|A|82
8QYX|1|C2|C|83
8QYX|1|C2|A|84
8QYX|1|C2|U|85
8QYX|1|C2|U|86
8QYX|1|C2|G|87
8QYX|1|C2|A|88
8QYX|1|C2|U|89
8QYX|1|C2|C|90
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain S1
- 60S ribosomal protein L26
- Chain b1
- 60S ribosomal protein L35
- Chain d1
- 60S ribosomal protein L37
- Chain f1
- 60S ribosomal protein L39
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