HL_8R3V_033

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R3V_033 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0902

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8R3V|1|72|G|1281
8R3V|1|72|U|1282
8R3V|1|72|G|1283
8R3V|1|72|A|1284
8R3V|1|72|A|1285
8R3V|1|72|A|1286
8R3V|1|72|A|1287
8R3V|1|72|G|1288
8R3V|1|72|C|1289

Current chains

Chain 72

23S ribosomal RNA

Nearby chains