HL_8R3V_078

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8R3V|1|A1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R3V_078 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1293

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8R3V|1|A1|G|259
8R3V|1|A1|G|260
8R3V|1|A1|U|261
8R3V|1|A1|A|262
8R3V|1|A1|A|263
8R3V|1|A1|C|264
8R3V|1|A1|G|265
8R3V|1|A1|G|266
8R3V|1|A1|C|267

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain Q1

Small ribosomal subunit protein uS17

Chain T1

Small ribosomal subunit protein bS20