HL_8R3V_100

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R3V_100 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.338

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8R3V|1|A1|C|1265
8R3V|1|A1|G|1266
8R3V|1|A1|C|1267
8R3V|1|A1|G|1268
8R3V|1|A1|A|1269
8R3V|1|A1|G|1270

Current chains

Chain A1

16S ribosomal RNA

Nearby chains

Chain M1

Small ribosomal subunit protein uS13

Chain S1

Small ribosomal subunit protein uS19