HL_8R3V_122

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8R3V|1|A2|U|842, 8R3V|1|A2|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R3V_122 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2416

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8R3V|1|A2|C|840
8R3V|1|A2|C|841
8R3V|1|A2|U|842
8R3V|1|A2|U|843
8R3V|1|A2|G|844
8R3V|1|A2|A|845
8R3V|1|A2|G|846

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain R2

Small ribosomal subunit protein bS18