HL_8R55_011

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

8R55|1|A|C|338, 8R55|1|A|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_011 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1505

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8R55|1|A|G|328
8R55|1|A|A|329
8R55|1|A|C|330
8R55|1|A|U|331
8R55|1|A|G|332
8R55|1|A|A|333
8R55|1|A|G|334
8R55|1|A|A|335
8R55|1|A|C|336
8R55|1|A|A|337
8R55|1|A|C|338
8R55|1|A|G|339
8R55|1|A|G|340
8R55|1|A|C|341

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20