HL_8R55_017

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

8R55|1|A|U|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_017 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.3447

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8R55|1|A|G|626
8R55|1|A|C|627
8R55|1|A|U|628
8R55|1|A|C|629
8R55|1|A|A|630
8R55|1|A|A|631
8R55|1|A|C|632

Current chains

Chain A

16S rRNA (1533-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16