HL_8R55_040

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGUAAGCAA

Length

9 nucleotides

Bulged bases

8R55|1|X|C|93, 8R55|1|X|A|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_040 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2572

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8R55|1|X|U|87
8R55|1|X|G|88
8R55|1|X|U|89
8R55|1|X|A|90
8R55|1|X|A|91
8R55|1|X|G|92
8R55|1|X|C|93
8R55|1|X|A|94
8R55|1|X|A|95

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain s

Large ribosomal subunit protein uL23

Chain t

Large ribosomal subunit protein uL24

Chain w

Large ribosomal subunit protein uL29