HL_8R55_050

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

8R55|1|X|A|373, 8R55|1|X|A|374, 8R55|1|X|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_050 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1666

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8R55|1|X|G|371
8R55|1|X|U|372
8R55|1|X|A|373
8R55|1|X|A|374
8R55|1|X|C|375
8R55|1|X|A|376
8R55|1|X|G|377
8R55|1|X|C|378
8R55|1|X|C|379

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain b

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24