HL_8R55_096

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_096 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1479

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8R55|1|X|C|2384
8R55|1|X|C|2385
8R55|1|X|U|2386
8R55|1|X|A|2387
8R55|1|X|C|2388
8R55|1|X|A|2389
8R55|1|X|A|2390
8R55|1|X|G|2391

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain i

50S ribosomal protein L15

Chain u

Large ribosomal subunit protein bL27