HL_8R55_100

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

8R55|1|X|G|2558, 8R55|1|X|U|2562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_100 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.4218

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8R55|1|X|U|2557
8R55|1|X|G|2558
8R55|1|X|U|2559
8R55|1|X|A|2560
8R55|1|X|G|2561
8R55|1|X|U|2562
8R55|1|X|C|2563
8R55|1|X|G|2564

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6