HL_8R55_105

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8R55|1|X|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_105 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1411

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8R55|1|X|C|2774
8R55|1|X|U|2775
8R55|1|X|G|2776
8R55|1|X|A|2777
8R55|1|X|A|2778
8R55|1|X|A|2779
8R55|1|X|G|2780
8R55|1|X|C|2781
8R55|1|X|A|2782
8R55|1|X|U|2783
8R55|1|X|C|2784
8R55|1|X|U|2785
8R55|1|X|A|2786
8R55|1|X|A|2787
8R55|1|X|G|2788

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain d

Large ribosomal subunit protein uL6

Chain e

Large ribosomal subunit protein uL13