HL_8R55_112

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

8R55|1|X|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R55_112 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.4922

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8R55|1|X|G|2333
8R55|1|X|U|2334
8R55|1|X|U|2335
8R55|1|X|G|2336
8R55|1|X|G|2337
8R55|1|X|A|2338
8R55|1|X|A|2339
8R55|1|X|A|2340
8R55|1|X|U|2341

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain c

Large ribosomal subunit protein uL5