3D structure

PDB id
8R8M (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8R8M|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8R8M_017 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0548
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8R8M|1|A|G|786
8R8M|1|A|A|787
8R8M|1|A|U|788
8R8M|1|A|U|789
8R8M|1|A|A|790
8R8M|1|A|G|791
8R8M|1|A|A|792
8R8M|1|A|U|793
8R8M|1|A|A|794
8R8M|1|A|C|795
8R8M|1|A|C|796

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 5
Paenilamicin B2
Chain K
Small ribosomal subunit protein uS11
Chain X
mRNA
Chain Z
Transfer RNA; tRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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