HL_8R8M_049

3D structure

PDB id

8R8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8R8M|1|a|G|386, 8R8M|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8R8M_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0482

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8R8M|1|a|A|382
8R8M|1|a|C|383
8R8M|1|a|A|384
8R8M|1|a|C|385
8R8M|1|a|G|386
8R8M|1|a|U|387
8R8M|1|a|G|388
8R8M|1|a|G|389
8R8M|1|a|U|390
8R8M|1|a|A|391
8R8M|1|a|U|392

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain w

Large ribosomal subunit protein bL28