HL_8RD8_014

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

ACACGAGAAAU

Length

11 nucleotides

Bulged bases

8RD8|1|Z2|G|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_014 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1184

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RD8|1|Z2|A|365
8RD8|1|Z2|C|366
8RD8|1|Z2|A|367
8RD8|1|Z2|C|368
8RD8|1|Z2|G|369
8RD8|1|Z2|A|370
8RD8|1|Z2|G|371
8RD8|1|Z2|A|372
8RD8|1|Z2|A|373
8RD8|1|Z2|A|374
8RD8|1|Z2|U|375

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain WD

Large ribosomal subunit protein bL28