HL_8RDV_007

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUACA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_007 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3381

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8RDV|1|Z2|U|159
8RDV|1|Z2|G|160
8RDV|1|Z2|U|161
8RDV|1|Z2|A|168
8RDV|1|Z2|C|169
8RDV|1|Z2|A|170

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain WD

Large ribosomal subunit protein bL28