HL_8RDV_008

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|A|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_008 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0776

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8RDV|1|Z2|G|191
8RDV|1|Z2|A|192
8RDV|1|Z2|A|193
8RDV|1|Z2|A|194
8RDV|1|Z2|C|195
8RDV|1|Z2|A|196
8RDV|1|Z2|U|197
8RDV|1|Z2|C|198

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Kd

Large ribosomal subunit protein uL15

Chain WD

Large ribosomal subunit protein bL28

Chain dh

Large ribosomal subunit protein bL35