HL_8RDV_011

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUGGGAAAG

Length

10 nucleotides

Bulged bases

8RDV|1|Z2|A|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_011 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.2761

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|C|291
8RDV|1|Z2|G|292
8RDV|1|Z2|U|293
8RDV|1|Z2|G|294
8RDV|1|Z2|G|295
8RDV|1|Z2|G|296
8RDV|1|Z2|A|297
8RDV|1|Z2|A|298
8RDV|1|Z2|A|299
8RDV|1|Z2|G|300

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain TI

Large ribosomal subunit protein uL24