HL_8RDV_018

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUUUAU

Length

6 nucleotides

Bulged bases

8RDV|1|Z2|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_018 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.1985

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|A|528
8RDV|1|Z2|U|529
8RDV|1|Z2|U|530
8RDV|1|Z2|U|531
8RDV|1|Z2|A|532
8RDV|1|Z2|U|533

Current chains

Chain Z2

23S rRNA

Nearby chains