HL_8RDV_028

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8RDV|1|Z2|U|942, 8RDV|1|Z2|C|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_028 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0995

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8RDV|1|Z2|U|939
8RDV|1|Z2|G|940
8RDV|1|Z2|C|941
8RDV|1|Z2|U|942
8RDV|1|Z2|A|943
8RDV|1|Z2|A|944
8RDV|1|Z2|C|945
8RDV|1|Z2|G|946

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain Lg

Large ribosomal subunit protein uL16