HL_8RDV_034

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_034 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0904

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8RDV|1|Z2|G|1265
8RDV|1|Z2|U|1266
8RDV|1|Z2|G|1267
8RDV|1|Z2|A|1268
8RDV|1|Z2|A|1269
8RDV|1|Z2|A|1270
8RDV|1|Z2|A|1271
8RDV|1|Z2|G|1272
8RDV|1|Z2|C|1273

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain MB

Large ribosomal subunit protein bL17

Chain RF

Large ribosomal subunit protein uL22