HL_8RDV_038
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUUGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|1437, 8RDV|1|Z2|U|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_038 not in the Motif Atlas
- Homologous match to HL_5J7L_169
- Geometric discrepancy: 0.0867
- The information below is about HL_5J7L_169
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_22622.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RDV|1|Z2|C|1435
8RDV|1|Z2|G|1436
8RDV|1|Z2|U|1437
8RDV|1|Z2|U|1438
8RDV|1|Z2|G|1439
8RDV|1|Z2|G|1440
8RDV|1|Z2|U|1441
8RDV|1|Z2|U|1442
8RDV|1|Z2|G|1443
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain MB
- Large ribosomal subunit protein bL17
Coloring options: