HL_8RDV_050
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 8RDV|1|Z2|A|1899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_050 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1782
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8RDV|1|Z2|G|1896
8RDV|1|Z2|U|1897
8RDV|1|Z2|A|1898
8RDV|1|Z2|A|1899
8RDV|1|Z2|C|1900
8RDV|1|Z2|U|1901
8RDV|1|Z2|A|1902
8RDV|1|Z2|U|1903
8RDV|1|Z2|A|1904
8RDV|1|Z2|A|1905
8RDV|1|Z2|C|1906
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain V
- Heterogenous tRNA
- Chain iN
- Small subunit ribosomal RNA; SSU rRNA
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