HL_8RDV_058

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_058 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1013

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8RDV|1|Z2|U|2307
8RDV|1|Z2|A|2308
8RDV|1|Z2|U|2309
8RDV|1|Z2|A|2310
8RDV|1|Z2|A|2311
8RDV|1|Z2|A|2312
8RDV|1|Z2|G|2313
8RDV|1|Z2|G|2314

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain F7

Large ribosomal subunit protein uL5

Chain V

Heterogenous tRNA

Chain VH

Large ribosomal subunit protein bL27