HL_8RDV_061
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGUAUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|2389
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_061 not in the Motif Atlas
- Homologous match to HL_5J7L_192
- Geometric discrepancy: 0.0499
- The information below is about HL_5J7L_192
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53454.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8RDV|1|Z2|U|2387
8RDV|1|Z2|G|2388
8RDV|1|Z2|U|2389
8RDV|1|Z2|A|2390
8RDV|1|Z2|U|2391
8RDV|1|Z2|G|2392
8RDV|1|Z2|G|2393
8RDV|1|Z2|A|2394
8RDV|1|Z2|A|2395
8RDV|1|Z2|G|2396
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Kd
- Large ribosomal subunit protein uL15
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