HL_8RDV_068
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8RDV|1|Z2|G|2734, 8RDV|1|Z2|C|2738
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDV_068 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0798
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8RDV|1|Z2|C|2728
8RDV|1|Z2|U|2729
8RDV|1|Z2|G|2730
8RDV|1|Z2|A|2731
8RDV|1|Z2|A|2732
8RDV|1|Z2|A|2733
8RDV|1|Z2|G|2734
8RDV|1|Z2|C|2735
8RDV|1|Z2|A|2736
8RDV|1|Z2|U|2737
8RDV|1|Z2|C|2738
8RDV|1|Z2|U|2739
8RDV|1|Z2|A|2740
8RDV|1|Z2|A|2741
8RDV|1|Z2|G|2742
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain GR
- Large ribosomal subunit protein uL6
- Chain IX
- Large ribosomal subunit protein uL13
- Chain ep
- Large ribosomal subunit protein bL36
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