HL_8RDV_075

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUAAAGGC

Length

9 nucleotides

Bulged bases

8RDV|1|iN|G|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1049

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RDV|1|iN|G|302
8RDV|1|iN|G|303
8RDV|1|iN|U|304
8RDV|1|iN|A|305
8RDV|1|iN|A|306
8RDV|1|iN|A|307
8RDV|1|iN|G|308
8RDV|1|iN|G|309
8RDV|1|iN|C|310

Current chains

Chain iN

16S rRNA

Nearby chains

Chain QZ

Small ribosomal subunit protein uS17

Chain To

Small ribosomal subunit protein bS20