HL_8RDV_077

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0954

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|G|363
8RDV|1|iN|A|364
8RDV|1|iN|C|365
8RDV|1|iN|U|366
8RDV|1|iN|G|367
8RDV|1|iN|A|368
8RDV|1|iN|G|369
8RDV|1|iN|A|370
8RDV|1|iN|C|371
8RDV|1|iN|A|372
8RDV|1|iN|C|373
8RDV|1|iN|G|374
8RDV|1|iN|G|375
8RDV|1|iN|C|376

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Pj

Small ribosomal subunit protein bS16

Chain To

Small ribosomal subunit protein bS20