HL_8RDV_085

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_085 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0888

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8RDV|1|iN|C|770
8RDV|1|iN|G|771
8RDV|1|iN|A|772
8RDV|1|iN|A|773
8RDV|1|iN|G|774
8RDV|1|iN|G|775

Current chains

Chain iN

16S rRNA

Nearby chains

Chain NV

Small ribosomal subunit protein bS21

Chain OL

Small ribosomal subunit protein uS15

Chain R3

Small ribosomal subunit protein bS18