HL_8RDV_093

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8RDV|1|iN|G|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_093 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0624

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8RDV|1|iN|G|1133
8RDV|1|iN|U|1134
8RDV|1|iN|U|1135
8RDV|1|iN|A|1136
8RDV|1|iN|A|1137
8RDV|1|iN|G|1138
8RDV|1|iN|U|1139
8RDV|1|iN|C|1140

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2

Chain GS

Small ribosomal subunit protein uS7