HL_8RDV_098

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8RDV|1|iN|U|1409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDV_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1003

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|G|1401
8RDV|1|iN|A|1402
8RDV|1|iN|U|1403
8RDV|1|iN|C|1404
8RDV|1|iN|A|1405
8RDV|1|iN|G|1406
8RDV|1|iN|A|1407
8RDV|1|iN|A|1408
8RDV|1|iN|U|1409
8RDV|1|iN|G|1410
8RDV|1|iN|C|1411

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain HK

Small ribosomal subunit protein uS14

Chain JY

Small ribosomal subunit protein uS10